If you’re searching for a snack that delivers a flavorful punch while keeping you fueled, the High-Protein Bagel Bites Recipe is exactly what you need. These mini bagels bring together the tangy creaminess of Greek yogurt and the hearty goodness of self-rising flour, resulting in soft, chewy bites with a protein boost that’s perfect for any time of the day. Topped with savory ham, silky smoked salmon, and melty cheese, then finished with a sprinkle of everything bagel seasoning, these delightful morsels are as delicious as they are satisfying.

Ingredients You’ll Need
This recipe keeps things wonderfully simple, letting every ingredient shine to create the perfect balance of taste, texture, and color. Each component plays a vital role — from the tangy, moist dough to those irresistible toppings that give you a savory hit in every bite.
- Self-rising flour (1 cup): The foundation that gives your bagel bites their tender crumb and light rise.
- Greek yogurt (1 cup): Adds moisture, protein, and a subtle tang; both non-fat and full-fat work beautifully here.
- Shredded cheese: For that irresistible gooey, melty texture that makes every bite heavenly.
- Chopped ham: Brings smoky, savory flavor and extra protein to your bites.
- Smoked salmon: Brings a delicate, salty richness that pairs perfectly with the soft dough.
- Everything bagel seasoning: A spice blend that adds crunch and zesty, garlicky notes on top.
- Egg wash (1 beaten egg): Ensures your bagel bites bake to a glossy, golden perfection.
How to Make High-Protein Bagel Bites Recipe
Step 1: Preheat and Prepare
Start by preheating your oven to 375°F (190°C) and lining a baking sheet with parchment paper. This sets the stage for baking your bagel bites to golden perfection without sticking.
Step 2: Mix the Dough
In a bowl, combine the self-rising flour and Greek yogurt. Stir them together until a cohesive dough forms. This mix creates a soft, protein-packed base that’s easier and quicker than traditional bagel dough recipes.
Step 3: Knead for Texture
Transfer the dough to a floured surface and knead it gently for 1 to 2 minutes until smooth. This step develops just enough gluten to give the bites structure while keeping them tender.
Step 4: Shape Your Mini Bagels
Divide the dough into 8 equal pieces. Roll each piece into a ball, then carefully poke a hole through the center using your finger to form mini bagels. These fun-sized shapes make snacking all the more enjoyable.
Step 5: Prepare for the Oven
Place the shaped bagel bites on your lined baking sheet. Brush the tops with the beaten egg wash—this is the secret to that stunning golden finish. Sprinkle everything bagel seasoning on top for a burst of flavor and crunch.
Step 6: Bake to Perfection
Bake your bagel bites for 20 to 25 minutes or until they’re beautifully golden brown and baked through. The aroma filling your kitchen will be irresistible.
Step 7: Add Toppings and Serve
Let the bagel bites cool just a little, then top them with shredded cheese, chopped ham, or smoked salmon. Add your toppings just before serving to keep their flavors fresh and vibrant.
How to Serve High-Protein Bagel Bites Recipe

Garnishes
A sprinkle of fresh herbs like dill or chives can elevate your bagel bites to a whole new level while adding freshness and a pop of color. A dollop of cream cheese or a smear of avocado also pairs beautifully, balancing the salty toppings with creaminess.
Side Dishes
Pair these bites with a crisp green salad or a bowl of mixed fresh fruit for a balanced snack or light meal. A tangy cucumber salad or a sweet and tangy tomato salsa also makes fantastic companions that complement the bagels’ flavors.
Creative Ways to Present
For parties or casual get-togethers, line up your High-Protein Bagel Bites Recipe on a platter with small dipping bowls of mustard, honey mustard, or even a spicy aioli. You can also serve them skewered with colorful veggies to make bite-sized sandwiches that guests adore.
Make Ahead and Storage
Storing Leftovers
If you have any leftovers, store them in an airtight container at room temperature for up to 2 days to keep their fresh, chewy texture. For longer storage, refrigeration is best, but warming before serving will help revive their softness.
Freezing
High-Protein Bagel Bites Recipe freezes wonderfully. Simply freeze the plain bagels in a sealed container or bag, keeping toppings aside. This way, you maintain freshness and avoid sogginess when reheating.
Reheating
To enjoy your frozen or refrigerated bites, reheat them in a 350°F (175°C) oven for about 10 minutes until warmed through and crispy on the outside. Add your favorite toppings after reheating to keep their flavors fresh and vibrant.
FAQs
Can I use regular flour instead of self-rising flour?
Absolutely! Just add 1½ teaspoons of baking powder and ¼ teaspoon of salt to every cup of all-purpose flour to replicate self-rising flour’s leavening effect.
Is it necessary to use Greek yogurt in the dough?
Greek yogurt is key for providing that rich protein boost and tender texture. You can’t easily substitute it with regular yogurt without changing the dough’s consistency.
Can I make these bagel bites vegan?
Yes! Swap out Greek yogurt for a plant-based yogurt alternative and replace the egg wash with a vegan option like a flax egg or plant-based milk for brushing.
How long do these bagel bites stay fresh?
Freshly baked bagel bites taste best within the first two days. If you want to enjoy them longer, freezing is your best bet.
Can I customize the toppings?
Definitely! This recipe is highly versatile. Feel free to get creative with different cheeses, deli meats, or even veggies like sautéed mushrooms or roasted peppers.
Final Thoughts
There’s truly nothing better than a snack that tastes incredible, keeps you full, and is easy to prepare. This High-Protein Bagel Bites Recipe ticks all those boxes and then some. Whether you’re fueling up for a busy day or treating friends at a gathering, these bagel bites are sure to become a favorite in your kitchen. Give this recipe a try—you’ll wonder how you ever lived without it!
Print
High-Protein Bagel Bites Recipe
- Prep Time: 10 minutes
- Cook Time: 25 minutes
- Total Time: 35 minutes
- Yield: 8 mini bagel bites
- Category: Snack
- Method: Baking
- Cuisine: American
- Diet: Low Fat
Description
These High-Protein Bagel Bites are a delicious, protein-packed snack or breakfast option made with a simple dough of self-rising flour and Greek yogurt. Topped with savory ingredients like shredded cheese, chopped ham, or smoked salmon, and finished with everything bagel seasoning, these bites are perfect for a quick, satisfying treat that’s easy to make and customizable to your taste.
Ingredients
Dough
- 1 cup self-rising flour (or 1 cup all-purpose flour + 1½ tsp baking powder + ¼ tsp salt)
- 1 cup plain Greek yogurt (non-fat or full-fat)
Toppings
- Shredded cheese (amount as desired)
- Chopped ham (amount as desired)
- Smoked salmon (amount as desired)
- Everything bagel seasoning (to sprinkle)
- Egg wash (1 egg, beaten)
Instructions
- Preheat Oven: Preheat your oven to 375°F (190°C) and line a baking sheet with parchment paper to prevent sticking and ensure even baking.
- Mix Dough: In a mixing bowl, combine the flour and Greek yogurt, stirring until a dough begins to form and no dry flour remains.
- Knead Dough: Transfer the dough to a floured surface and knead it for 1–2 minutes until it becomes smooth and elastic.
- Shape Bagels: Divide the dough into 8 equal pieces, roll each piece into a ball, then use your finger to poke a hole through the center to create a mini bagel shape.
- Prepare for Baking: Arrange the bagel bites on the prepared baking sheet. Brush the tops with the beaten egg wash to help with browning and to help toppings stick, then sprinkle everything bagel seasoning on top as desired.
- Bake: Place the baking sheet in the oven and bake for 20–25 minutes or until the bagel bites turn golden brown and firm to the touch.
- Cool and Add Toppings: Let the bagel bites cool slightly after baking. Add shredded cheese, chopped ham, or smoked salmon just before serving for the best texture and flavor.
- Freezing Instructions: To freeze, store the plain baked bagels in a sealed container or freezer bag. Reheat them before adding toppings to keep them fresh and flavorful.
Notes
- You can substitute self-rising flour with all-purpose flour by adding baking powder and salt as specified.
- Use either non-fat or full-fat Greek yogurt depending on your preference and desired richness.
- Feel free to customize the toppings according to your taste or dietary needs.
- Brush the bagels with egg wash for a shiny, golden crust, but you can omit it for a vegan version by using plant-based milk or simply water.
- These bagel bites are best eaten fresh but freeze well without toppings.
- Adjust baking time slightly if bagels are larger or smaller than the suggested size.

