If you’re craving a dessert that bursts with fresh, vibrant flavors and has a delightfully creamy texture, this Blueberry Lime Cheesecake Cupcakes Recipe will be your new favorite. These cupcakes combine a buttery base with luscious cream cheese filling, infused with zesty lime, and topped with sweet blueberry preserves and fresh berries. Each bite is a perfect harmony of tart and sweet that feels like summer in every mouthful. Whether you’re making them for a special occasion or a cozy treat at home, these cupcakes are sure to impress and satisfy.

Ingredients You’ll Need
These ingredients are simple but essential, each contributing to the perfect balance of taste, texture, and that irresistible burst of color that makes these cupcakes so delightful.
- 1 1/2 cups all-purpose flour: Provides the sturdy yet tender cake base to hold all the delicious fillings.
- 1/2 cup unsalted butter, softened: Adds richness and moisture, essential for a smooth cupcake crumb.
- 1/4 cup granulated sugar: Sweetens the batter just right, balancing the tartness of lime and blueberries.
- 1/2 teaspoon vanilla extract: Enhances the overall flavor with warm, subtle notes.
- 8 oz cream cheese, softened: The star ingredient of the cheesecake filling, creamy and indulgent.
- 1/4 cup powdered sugar: Sweetens the cream cheese filling without any gritty texture.
- 1 teaspoon lime zest: Adds zingy citrus aroma and flavor that cuts through the richness.
- 1 tablespoon lime juice: Boosts brightness and balances sweetness with citrus tang.
- 1 cup blueberry preserves: Offers a luscious, fruity topping layer bursting with blueberry goodness.
- 1 cup fresh blueberries: Provides juicy, fresh bursts that elevate every bite with natural sweetness.
- 1/2 cup purple-tinted cream cheese frosting: A decorative and flavorful frosting that complements the cupcakes beautifully.
- Lime slices and zest for garnish: Adds a fresh, eye-catching final touch that invites you to dig in.
How to Make Blueberry Lime Cheesecake Cupcakes Recipe
Step 1: Prepare the Cupcake Base
Start by preheating your oven to 350°F (175°C) and lining a cupcake pan with paper liners. Cream the softened butter and granulated sugar together until light and fluffy, which is key to a tender crumb. Gradually add in the vanilla extract and flour, stirring just until combined to avoid overmixing that can toughen your cupcakes.
Step 2: Make the Cheesecake Filling
In a separate bowl, blend the softened cream cheese with powdered sugar until silky smooth. Stir in the lime zest and lime juice to infuse that bright citrus flavor. This luscious filling will provide the creamy heart of your cheesecake cupcakes.
Step 3: Assemble the Cupcakes
Fill each cupcake liner about half full with the cake batter. Then, dollop a generous spoonful of the cream cheese mixture onto the center of each and cover with the remaining batter. This layering ensures a delightful surprise of cheesecake in every bite.
Step 4: Bake and Cool
Bake for about 10 minutes or until a toothpick inserted into the cupcake part (not the cream cheese center) comes out clean. Allow the cupcakes to cool completely in the pan. This step is crucial before adding the frosting and toppings to prevent melting.
Step 5: Add Blueberry Preserves and Fresh Blueberries
Once cooled, spread a generous layer of blueberry preserves on top of each cupcake. Finish by dotting fresh blueberries all over, adding natural sweetness and a lovely pop of color.
Step 6: Frost and Garnish
Pipe or dollop the purple-tinted cream cheese frosting over each cupcake, then garnish with thin lime slices and a sprinkle of lime zest for a stunning, fresh presentation that matches the flavors inside.
How to Serve Blueberry Lime Cheesecake Cupcakes Recipe

Garnishes
Enhance these cupcakes by adding extra lime zest and fresh blueberries on top just before serving. The contrast of bright citrus and juicy berries adds a lively touch that excites both the eye and palate.
Side Dishes
Serve alongside a light green tea or a sparkling lemonade to complement the cupcakes’ citrus notes without overpowering their delicate balance. Fresh fruit salads or a dollop of whipped cream also pair beautifully for a complete dessert experience.
Creative Ways to Present
Try serving these cupcakes on a tiered stand sprinkled with edible flowers or fresh mint leaves for a stunning dessert table centerpiece. Placing each cupcake in a decorative liner matching the color of blueberries or lime zest adds an extra layer of charm and fun.
Make Ahead and Storage
Storing Leftovers
Store any leftover Blueberry Lime Cheesecake Cupcakes Recipe in an airtight container in the refrigerator. They will stay fresh and creamy for up to 3 days, allowing the flavors to meld even more brilliantly.
Freezing
You can freeze unfrosted cupcakes wrapped tightly in plastic wrap and placed in a freezer bag for up to 2 months. When ready to enjoy, thaw them in the refrigerator overnight and frost just before serving for the best texture and taste.
Reheating
Because these are cheesecake-based cupcakes, reheating is not recommended as it can affect their creamy texture. Instead, let them come to room temperature before serving for optimal flavor and mouthfeel.
FAQs
Can I use fresh lime juice instead of bottled?
Absolutely! Fresh lime juice is preferred as it offers a brighter, more natural citrus flavor that really shines in the Blueberry Lime Cheesecake Cupcakes Recipe.
What can I substitute for fresh blueberries?
If fresh blueberries aren’t available, frozen blueberries can work fine—just make sure to thaw and drain them well to avoid excess moisture that could affect the cupcake texture.
Is there a gluten-free version of this recipe?
You can substitute the all-purpose flour with a gluten-free flour blend. Be sure to check that the blend you use contains xanthan gum or another binder to keep the cupcake structure intact.
Can I make these cupcakes dairy-free?
While a bit tricky due to cream cheese, you could try dairy-free cream cheese and butter substitutes. Keep in mind the texture may change slightly but the flavors can still be delicious.
How do I prevent the cheesecake filling from leaking out during baking?
Make sure the cream cheese filling is chilled before assembling and avoid overfilling the cupcake liners. This helps the filling hold its shape and stay inside during baking.
Final Thoughts
There’s something truly magical about this Blueberry Lime Cheesecake Cupcakes Recipe—the way tangy lime and sweet blueberries mingle in a creamy, bite-sized treat. They bring joy to any table and are surprisingly straightforward to make. I wholeheartedly encourage you to whip up a batch and experience the refreshing delight these cupcakes offer!
Print
Blueberry Lime Cheesecake Cupcakes Recipe
- Prep Time: 20 minutes
- Cook Time: 10 minutes
- Total Time: 30 minutes
- Yield: 12 cupcakes
- Category: Dessert
- Method: Baking
- Cuisine: American
Description
These Blueberry Lime Cheesecake Cupcakes combine a moist vanilla-flavored cupcake base with a creamy lime-infused cheesecake layer and a vibrant blueberry topping. Each cupcake is crowned with a swirl of purple-tinted cream cheese frosting and garnished with fresh lime zest and slices for a refreshing burst of flavor. Perfectly portioned for sharing or individual indulgence, these cupcakes balance tartness and sweetness beautifully.
Ingredients
Cupcake Base
- 1 1/2 cups all-purpose flour
- 1/2 cup unsalted butter, softened
- 1/4 cup granulated sugar
- 1/2 teaspoon vanilla extract
Cheesecake Layer
- 8 oz cream cheese, softened
- 1/4 cup powdered sugar
- 1 teaspoon lime zest
- 1 tablespoon lime juice
Topping
- 1 cup blueberry preserves
- 1 cup fresh blueberries
- 1/2 cup purple-tinted cream cheese frosting
- Lime slices and zest for garnish
Instructions
- Prepare the Cupcake Batter: Cream the unsalted butter and granulated sugar together until light and fluffy. Add the vanilla extract and mix well. Gradually add the all-purpose flour, mixing until just combined to form the cupcake batter.
- Make the Cheesecake Filling: In a separate bowl, beat the softened cream cheese until smooth. Add powdered sugar, lime zest, and lime juice, blending until creamy and evenly mixed.
- Assemble the Cupcakes: Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with cupcake liners. Spoon a small amount of cupcake batter into each liner to cover the bottom. Add a spoonful of the cheesecake filling on top of the batter, then cover with another layer of cupcake batter, filling each liner about 3/4 full.
- Bake the Cupcakes: Bake in the preheated oven for approximately 10 minutes, or until a toothpick inserted into the cupcake base (not the cheesecake) comes out clean.
- Cool the Cupcakes: Remove the cupcakes from the oven and allow them to cool in the pan for about 5 minutes. Then transfer to a wire rack and let them cool completely.
- Add Toppings: Once cooled, spoon blueberry preserves over the top of each cupcake, and sprinkle fresh blueberries on top.
- Frost and Garnish: Using a piping bag or knife, spread or pipe the purple-tinted cream cheese frosting onto each cupcake. Garnish with thin lime slices and extra lime zest for a decorative and flavorful finish.
Notes
- Ensure cream cheese and butter are softened for easier mixing and better texture.
- Do not overbake the cupcakes to keep the cheesecake layer creamy.
- The purple tint in the frosting can be achieved by adding a few drops of natural food coloring or blueberry juice.
- For a more intense lime flavor, add an extra 1/2 teaspoon lime zest into the cupcake batter.
- Fresh blueberries add texture and freshness, but you can substitute with frozen if out of season.

